Impact of Queuosine Modification of Endogenous E. coli tRNAs on Sense Codon Reassignment
Jillyn M. Tittle, David G. Schwark, Wil Biddle, Margaret A. Schmitt, John D. Fisk*
2022, Frontiers in Molecular Biosciences, volume 9, article 938114 (August 31, 2022)
*Invited contribution to the Special Collection “Exploring and Expanding the Protein Universe with Non-Canonical Amino Acids”
Wil Biddle, David G. Schwark, Margaret A. Schmitt, John D. Fisk*
2022, Frontiers in Chemistry, Volume 10, Article 815788
*Contribution to the Special Collection “Expansion of the Genetic Code: Unnatural Amino Acids and their Applications”
David G. Schwark, Margaret A. Schmitt, John D. Fisk*
2021, Int. J. Mol. Sci., volume 22, 895
https://doi.org/10.3390/ijms22020895
*Invited contribution to the Special Issue “Expanding and Reprogramming the Genetic Code 2.0”
David G. Schwark, Margaret A. Schmitt, Wil Biddle, John D. Fisk*
2020, ChemBioChem, volume 21, pages 2274-2286
*Invited contribution to the Special Issue “Xenobiology”
Dissecting the Contribution of Release Factor Interactions to Amber Stop Codon Reassignment Efficiencies of the Methanocaldococcus jannaschii Orthogonal Pair
David G. Schwark, Margaret A. Schmitt, John D. Fisk*
2018, Genes, volume 9, page 546
*Invited contribution to the Special Issue “Synthetic DNA and RNA Programming”
Margaret A. Schmitt, Wil Biddle, John D. Fisk*
2018, Biochemistry, volume 57, pages 2762-2774
Ning Zhao, John S. Spencer, Margaret A. Schmitt, John D. Fisk*
2017, Analytical Biochemistry, volume 521, pages 59-71
Modification of Orthogonal tRNAs: Unexpected Consequences for Sense Codon Reassignment
Wil Biddle, Margaret A. Schmitt, John D. Fisk*
2016, Nucleic Acids Research, volume 44, pages 10042-10050
Steven W. Smeal, Margaret A. Schmitt, Ronnie Rodrigues Pereira, Ashok Prasad, John D. Fisk*
2017, Virology, volume 500, pages 259-274
https://doi.org/10.1016/j.virol.2016.08.017
*Selected by the Editors as a Highlighted article for this issue!
Steven W. Smeal, Margaret A. Schmitt, Ronnie Rodrigues Pereira, Ashok Prasad, John D. Fisk*
2017, Virology, volume 500, pages 275-284
Ning Zhao, Margaret A. Schmitt, John D. Fisk*
2016, FEBS J, volume 283, pages 1351-1367
Evaluating sense codon reassignment with a simple fluorescence screen
Wil Biddle, Margaret A. Schmitt, John D. Fisk*
2015, Biochemistry, volume 54, pages 7355-7364
https://doi.org/10.1021/acs.biochem.5b00870
*Selected as An ACS Editors' Choice manuscript!
Earlier Publications
15. Beatty, K. E.; Szychowski, J.; Fisk, J. D.; Tirrell, D. A., A BODIPY-Cyclooctyne for Protein Imaging in Live Cells. Chembiochem. 2011, 12, 2137-2139.
14. Freire, F., Almeida, A. M., Fisk, J. D., Steinkruger, J. D. and Gellman, S. H., Impact of Strand Length on the Stability of Parallel-β-Sheet Secondary Structure. Angewandte Chemie Int Ed. 2011, 50, 8735-8738.
13. Van Deventer, J.A; Fisk, J.D.; Tirrell D.A., Homoisoleucine: A translationally-active leucine surrogate of expanded hydrophobic surface area. Chembiochem 2011, 12, 700-702
12. Beatty, K. E.; Fisk, J. D.; Smart, B. P.; Lu, Y. Y.; Szychowski, J.; Hangauer, M. J.; Baskin, J. M.; Bertozzi, C. R.; Tirrell, D. A., Live-Cell Imaging of Cellular Proteins by a Strain-Promoted Azide-Alkyne Cycloaddition. Chembiochem 2010, 11 (15), 2092-2095.
11. Friere-Iribarne, F.; Fisk, J. D.; Peoples, A. J.; Gellman, S. H. “Diacid Linkers that Promote Parallel b-Sheet Secondary Structure in Water” J. Am. Chem. Soc. 2008, 130, 7839-7841.
10. Fisk, J. D.; Schmitt, M. A.; Gellman, S. H. “Thermodynamic Analysis of Autonomous Parallel b-Sheet Formation in Water.” J. Am. Chem. Soc. 2006, 128, 7148-7149.
9. Lai, J. R.; Fisk, J. D.; Weisblum, B.; Gellman, S. H. “Hydrophobic Core Repacking in a Coiled-Coil Dimer via Phage Display: Insights into Plasticity and Specificity at a Protein – Protein Interface” J. Am. Chem. Soc. 2004, 126, 10514-10515.
8. Huck, B. R.; Fisk, J. D.; Guzei, I. A.; Carlson, H. S.; Gellman, S.H. “Secondary Structural Preferences of 2,2-Disubstituted Pyrrolidine-4-Carboxylic Acid Oligomers: β-Peptide Foldamers that Cannot Form Internal Hydrogen Bonds.” J. Am. Chem. Soc. 2003, 125, 9035-9037.
7. Syud, F.A.; Stanger, H. E; Mortell, H. S; Espinosa J. F.; Fisk, J. D.; Fry, C. G.; Gellman S. H.; “Influence of Strand Number on Antiparallel b-Sheet Stability in Designed Three- and Four-stranded b-Sheets.” J. Mol. Biol. 2003, 326, 553-568.
6. Woll, M. G.; Fisk, J. D.; LePlae, P. R.; Gellman, S. H. “Stereoselective Synthesis of 3-Substituted 2-Aminocyclopropanecarboxylic Acid Derivatives and Their Incorporation into Short 12-Helical b-Peptides that Fold in Water.” J. Am. Chem. Soc. 2002, 124, 12447-12452.
5. LePlae, P. R.; Fisk, J. D.; Porter, E. A.; Gellman, S. H. “Tolerance of Acyclic Residues in the Peptide 12-Helix: Access to Diverse Side-Chain Arrays for Biological Applications.” J. Am. Chem. Soc. 2002, 124, 6820-6821.
4. Langenhan, J. M.; Fisk, J. D.; Gellman, S. H. “Evaluation of Hydrogen Bonding Complementarity between a Secondary Sulfonamide and an a-Amino Acid Residue.” Org. Lett. 2001; 3, 2559-2562.
3. Fisk, J. D.; Gellman, S. H. “A Parallel b-Sheet Model System that Folds in Water.” J. Am. Chem. Soc. 2001, 123, 343-344.
2. Fisk, J. D.; Powell, D. R.; Gellman, S. H. “Control of Hairpin Formation via Proline Configuration in Parallel b-Sheet Model Systems.” J. Am. Chem. Soc. 2000, 122, 5443-5447.
1. Huck, B. R.; Fisk, J. D.; Gellman, S. H. “Promotion of Sheet Formation in a-Peptide Strands by a b-Peptide Reverse Turn.” Org. Lett. 2000, 2, 2607-2610.
Fisk Lab Research Publications Keywords:
1) Sense codon reassignment: sense codon reassignment, genetic code expansion, non-canonical amino acids, orthogonal translational machinery, tRNA modification, combinatorial library, aminoacyl tRNA synthetase
2) Phage display: phage display, combinatorial libraries, alternative scaffold, hyperthermophilic protein, molecular recogntion, directed evolution
3) M13 computational model: bacteriophage, M13, virus life cycle, computational simulation, genetically-structured simulation, systems biology, synthetic biology